rs33584905 SNP Detail

Summary

• ID
  rs33584905
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85429980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGT ACGGAGCCTA GCTTGGGGGA
  Y
  TACCCTGTAA TCCAGACTGA CACAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss46293370	mCV24193628	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss145392333	ENSMUSSNP6389302	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C
ss322751401	CHEV_8_87227250	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs33584905					SNP	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85429980 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20707	CpG island 20707	1342 bp distal
Cpgi20708	CpG island 20708	316 bp proximal
Cpgi20709	CpG island 20709	1712 bp proximal
Lyl1	lymphoblastomic leukemia 1	within coordinates
Nfix	nuclear factor I/X	1361 bp downstream
Rr187001	regulatory region 187001	within coordinates
Rr368567	regulatory region 368567	1166 bp upstream
Rr401025	regulatory region 401025	1866 bp downstream
Tssr78433	transcription start site region 78433	1854 bp downstream
Tssr78434	transcription start site region 78434	1582 bp downstream
Tssr78435	transcription start site region 78435	1553 bp downstream
Tssr78436	transcription start site region 78436	1524 bp downstream
Tssr78437	transcription start site region 78437	1469 bp downstream
Tssr78438	transcription start site region 78438	1441 bp downstream
Tssr78439	transcription start site region 78439	40 bp upstream
Tssr82116	transcription start site region 82116	1625 bp upstream
Tssr82117	transcription start site region 82117	1775 bp downstream
Tssr82118	transcription start site region 82118	1811 bp downstream
Tssr82119	transcription start site region 82119	1839 bp downstream
Tssr82120	transcription start site region 82120	1916 bp downstream