rs33586166 SNP Detail

Summary

• ID
  rs33586166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:25155074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGGAAGGTC CGGGAGTCAG AGCTTGGCAG GCCTTTGCCT
  TCTGCAAGGA TGGATTGAAC GCCCAGGCTT CATGCCAGAC GTGGTCAAGA GGGCCTTGGG
  Y
  AGAGAAACTC AAGAATAATC CCCTAGAGGC TCAAATGACC AAGGTGAGCC ATATTTCCTA
  GCCAGCTCTG GCCAGTGGCT TGGAACCCTC TGGGCACAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45296528	mCV25419261	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss146377547	ENSMUSSNP6448567	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33586166					SNP	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:25155074 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Tprn	taperin			Intron
				Noncoding-Transcript-Variant
Tssr16682	transcription start site region 16682			1852 bp downstream
Tssr16683	transcription start site region 16683			1843 bp downstream
Tssr16684	transcription start site region 16684			1715 bp downstream
Tssr16685	transcription start site region 16685			1694 bp downstream
Tssr16686	transcription start site region 16686			1681 bp downstream
Tssr16687	transcription start site region 16687			1131 bp downstream
Tssr16688	transcription start site region 16688			772 bp downstream
Tssr16689	transcription start site region 16689			749 bp downstream
Tssr16690	transcription start site region 16690			495 bp upstream