rs33586715 SNP Detail

Summary

• ID
  rs33586715
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:84657708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACATTCTCGG GGCTGCATGG GTTCAGACCC ACGGTTTTGT
  GTGTTCCGTC CCAACTGTCA ATCCTCTGGC TCTAGGAGTG ATCTCGAGGT ACTAAGAGGG
  Y
  TCGGTTTCCA TCCCCGAGCC CCATGACATC GCGAGTGACC TTGAGCTGGA CACTGTCCTC
  TTTAAGGGCC TCATCTCCAC TTCTGTTAAG AGGGCTGAT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45296339	mCV23821578	ABI	CRAMUS_MOUSE	f	SNP	C	T	C	T
ss146834930	ENSMUSSNP145048	ENSEMBL	ENSEMBL_Sanger	f	SNP		T		T
ss320372122	CHEV_2_84667521	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33586715					SNP	C	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84657708 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11868	CpG island 11868	214 bp distal
Cpgi11869	CpG island 11869	127 bp proximal
Gm75309	predicted gene, 75309	528 bp upstream
Rr397100	regulatory region 397100	248 bp downstream
Rr560357	regulatory region 560357	539 bp distal
Rr560358	regulatory region 560358	within coordinates
Rr560359	regulatory region 560359	1265 bp proximal
Timm10	translocase of inner mitochondrial membrane 10	Intron
Tssr18699	transcription start site region 18699	297 bp downstream
Tssr18700	transcription start site region 18700	266 bp downstream