rs33586740 SNP Detail

Summary

• ID
  rs33586740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90629077 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTC TTTGGCGAAT TCCTACCTGA
  Y
  CTCTGAGCAA AATACCTTAG CAAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48331045	NES12197043	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	C		C	C	C	C		C
ss325276377	CHEV_16_90832434	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33586740					SNP	C	T	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48331045	NES12197043	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90629077 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8431	CpG island 8431	302 bp distal
Eva1c	eva-1 homolog C	within coordinates
Rr519213	regulatory region 519213	1066 bp distal
Rr519214	regulatory region 519214	1059 bp proximal
Tssr139314	transcription start site region 139314	1764 bp downstream
Tssr139315	transcription start site region 139315	1311 bp downstream
Tssr139316	transcription start site region 139316	1039 bp downstream
Tssr139317	transcription start site region 139317	965 bp downstream
Tssr139318	transcription start site region 139318	582 bp upstream