rs33586742 SNP Detail

Summary

• ID
  rs33586742
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90628894 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCATGTAA GGAGACTTGT CCAGGGCACG TTGGACAGAA
  AGTCCAAGCC AGCCTCGAGG GGGGGAGCCT GGGAAGACTG GAGGTCTGGT GGAGATGCCC
  K
  GAGACTGATA GAAGCTGACA GAACAGAGAC TGGACTCAGA GGCATGACTC TCCAACAAAA
  GGTGGCAGCA CCCCCCCCCC AACACACACA CACACACAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss48331047	NES12197041	PERLEGEN	MM_PANEL2	f	SNP	T	G	T	G	G	G	G	G		T	G	G	T		G
ss325276374	CHEV_16_90832251	CHEVERUD	SCREENING_POP	f	SNP									G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33586742					SNP	T	G	T	G	G	G	G	G	G	T	G	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48331047	NES12197041	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90628894 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8431	CpG island 8431	119 bp distal
Eva1c	eva-1 homolog C	within coordinates
Rr519213	regulatory region 519213	883 bp distal
Rr519214	regulatory region 519214	1242 bp proximal
Tssr139312	transcription start site region 139312	1904 bp downstream
Tssr139313	transcription start site region 139313	1873 bp downstream
Tssr139314	transcription start site region 139314	1581 bp downstream
Tssr139315	transcription start site region 139315	1128 bp downstream
Tssr139316	transcription start site region 139316	856 bp downstream
Tssr139317	transcription start site region 139317	782 bp downstream
Tssr139318	transcription start site region 139318	765 bp upstream