rs33586743 SNP Detail

Summary

• ID
  rs33586743
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90628811 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAAGATTGCC GTGGTCTGGA CGAAGGGTTG CACTTGGCTG
  GCCACTCACA CGATAAGGGT GCGTCCCAAC CAGACTCCAG GGTACCCATG TAAGGAGACT
  W
  GTCCAGGGCA CGTTGGACAG AAAGTCCAAG CCAGCCTCGA GGGGGGGAGC CTGGGAAGAC
  TGGAGGTCTG GTGGAGATGC CCGGAGACTG ATAGAAGCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss48331048	NES12197040	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	A	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33586743					SNP	T	T	T	T	T	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48331048	NES12197040	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90628811 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8431	CpG island 8431	36 bp distal
Eva1c	eva-1 homolog C	within coordinates
Rr519213	regulatory region 519213	800 bp distal
Rr519214	regulatory region 519214	1325 bp proximal
Tssr139312	transcription start site region 139312	1821 bp downstream
Tssr139313	transcription start site region 139313	1790 bp downstream
Tssr139314	transcription start site region 139314	1498 bp downstream
Tssr139315	transcription start site region 139315	1045 bp downstream
Tssr139316	transcription start site region 139316	773 bp downstream
Tssr139317	transcription start site region 139317	699 bp downstream
Tssr139318	transcription start site region 139318	848 bp upstream