rs33587745 SNP Detail

Summary

• ID
  rs33587745
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90628505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGATTAAAG TTGAAGTGTT CTCCCTAACT AGTTATCTTG
  CCTCGTGGGA GCCCTTGGCA TCTAGGTGGT GGTAGCAGGG AAGTCAGCCC TTATTAAGGC
  Y
  GGGCTTATTT CGAGTTTCTC TAGGCTCTCT TGACTTTTGT TAGTTTCCTG GGCATCGGCG
  ACGCAGCCCT GACCTTTGCA TGTTCACCAG AGGACCCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48331050	NES12197038	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	T	C	T	C
ss148543162	ENSMUSSNP1038279	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33587745					SNP	C	C	C	C	C	C	T	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48331050	NES12197038	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90628505 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8431	CpG island 8431	within coordinates
Eva1c	eva-1 homolog C	within coordinates
Rr519213	regulatory region 519213	494 bp distal
Rr519214	regulatory region 519214	1631 bp proximal
Tssr139312	transcription start site region 139312	1515 bp downstream
Tssr139313	transcription start site region 139313	1484 bp downstream
Tssr139314	transcription start site region 139314	1192 bp downstream
Tssr139315	transcription start site region 139315	739 bp downstream
Tssr139316	transcription start site region 139316	467 bp downstream
Tssr139317	transcription start site region 139317	393 bp downstream
Tssr139318	transcription start site region 139318	1154 bp upstream