rs33588365 SNP Detail

Summary

• ID
  rs33588365
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:136508680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTCGCTAT AGCTTGAGGG
  CTGGAGTCCA TATTCCCAAG ACCCATTTTT AGAAGCTGGA CATGTTTAGA TGCATCTATA
  AAACACCCCT CCAAGTGCTT GAGAGAGTGA GGGGCTGGAA GACAGCAGCA TAGCTCCAGG
  TTCTTCGAGC AACTTTGTCT CAAGAGCAAA TAAGAGAGAG TGATTCAGCA GTGGACTTGA
  Y
  TTCTTCCTCT GGCCTCCTAC AACACCTGTG CATATAATAT CCACACCACA CCACACCACA
  GAGGGAGGGA GGGAGAGAGA CAGAAAGAGG TAGAAAGGGA GAGAGAAGGA GACTCAGAAA
  GGCACACATA CAGAGAGAGA CAAACAGACA GACATACACA CACATCATGT TTTTTTTTTT
  TTAATTAGAA AATTTGAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss49503709	NES12860449	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	T	T	C	C	C
ss145558990	ENSMUSSNP3884802	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33588365					SNP	T	C	C	C	C	C	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49503709	NES12860449	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:136508680 () rs orientation: forward

Symbol	Name	Function Class
4933409D19Rik	RIKEN cDNA 4933409D19 gene	within coordinates
Gm33994	predicted gene, 33994	363 bp upstream
Gm57131	predicted gene, 57131	within coordinates
Rr367011	regulatory region 367011	1229 bp downstream
Rr419472	regulatory region 419472	1476 bp distal
Rr419473	regulatory region 419473	1264 bp distal
Rr419474	regulatory region 419474	985 bp proximal
Tssr9072	transcription start site region 9072	1291 bp downstream
Tssr9073	transcription start site region 9073	1269 bp downstream
Tssr13942	transcription start site region 13942	395 bp upstream
Tssr13943	transcription start site region 13943	380 bp upstream
Tssr13944	transcription start site region 13944	353 bp upstream