rs33588554 SNP Detail

Summary

• ID
  rs33588554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90626451 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATGAGGGGA TAAGATAGAC GAATAGGAGG GACCCGAGGT
  CTGCACACTC TTTCTCCAGT GGTCTTTGTG AATTGAGCAA CCTTACCTAC TCTTCCAGCC
  Y
  TAGTTTACCC AACATAAGAC GTTCATATTA AACTTATATC CCATGATTAT TGAGGCTGTG
  TTTTTAAAAA AGATTGTGTG TGTGTGGGGG GGGGGGCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss48331059	NES12197108	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		T	T	C	T	T	C	T
ss148543088	ENSMUSSNP1654463	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33588554					SNP	T	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss48331059	NES12197108	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90626451 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8431	CpG island 8431	306 bp proximal
Eva1c	eva-1 homolog C	within coordinates
Rr519212	regulatory region 519212	1668 bp distal
Rr519213	regulatory region 519213	806 bp proximal
Tssr139312	transcription start site region 139312	518 bp upstream
Tssr139313	transcription start site region 139313	553 bp upstream
Tssr139314	transcription start site region 139314	842 bp upstream
Tssr139315	transcription start site region 139315	1267 bp upstream
Tssr139316	transcription start site region 139316	1566 bp upstream
Tssr139317	transcription start site region 139317	1652 bp upstream