rs33588621 SNP Detail

Summary

• ID
  rs33588621
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122806369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCCA GATGCCTGTC CTCAGAGCTC
  Y
  ATCCTGGATC CTGGGTCATG GGCCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45797430	mCV22631318	ABI	CRAMUS_MOUSE	f	SNP		C	C					T	T
ss51196354	NES13816693	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T	T		T	T	T		C	C		C
ss149189120	ENSMUSSNP599478	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T
ss321669304	CHEV_5_123118315	CHEVERUD	SCREENING_POP	f	SNP												C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs33588621					SNP	C	C	C	T	C	T	T	T	T	T	T	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51196354	NES13816693	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122806369 () rs orientation: forward

Symbol	Name	Function Class
Gm71511	predicted gene, 71511	1324 bp downstream
P2rx7	purinergic receptor P2X, ligand-gated ion channel, 7	within coordinates