rs33589091 SNP Detail

Summary

• ID
  rs33589091
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164789129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTTG CTGAAGACAG ATCAAGGCCC
  Y
  GCTCCACCAT GGTGGCAGGC GAGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss45296377	mCV23740746	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T	C
ss148233495	ENSMUSSNP3519555	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C		C		T
ss320607182	CHEV_2_164772709	CHEVERUD	SCREENING_POP	f	SNP						T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33589091					SNP	T	T	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164789129 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	1879 bp proximal
D2Dcr116	DNA Segment, Chr 2, Derry C. Roopenian 116	851 bp proximal
D2Mit1000	DNA segment, Chr 2, Massachusetts Institute of Technology 1000	853 bp proximal
Mmp9	matrix metallopeptidase 9	within coordinates
Tssr21688	transcription start site region 21688	134 bp downstream
Tssr21689	transcription start site region 21689	532 bp upstream
Tssr21690	transcription start site region 21690	1022 bp upstream