rs33589582 SNP Detail

Summary

• ID
  rs33589582
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:151353255 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTAAAATG TTAAGAGTCA
  AGCCATACTT ATTATTTGTG AAGAAAGACT TTTGTGTCTC CCTTGTGGGG ATGCCAGACA
  GAAGTGTATC ATTCTAGTGA GCACCTAGGG GTAGATGAAA GACAGAGACA GGCAAAACTG
  GAATATAATA GTTGAACAAG GAGACCTGAA TTCAAGTGCC AGTTCTGGTT GTACAATCAA
  Y
  ATTCAGTCTA GGAATGTCTT AAGGTCTCTC CAGGTTGATT TCTCTTTCTG TTTCTAAGAA
  TGAAGAAGTG AGGCTTATTT AATGATGTAA AATTAGATGC TTTCAGAAGT TTCGGGTGTA
  ACTCACTAGG AGGTAGGTGC TCAGGGGAGC CTAGAGGCCA CATGATCCAC ATATTTTATA
  AGGAGACAAG AATTGAGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45797640	mCV23844877	ABI	CRAMUS_MOUSE	f	SNP	T	C
ss60861243	NES15995641	PERLEGEN	MM_PANEL2	f	SNP		C	C	C	T	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33589582					SNP	T	C	C	C	T	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60861243	NES15995641	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:151353255 () rs orientation: forward

Symbol	Name	Function Class
D730045B01Rik	RIKEN cDNA D730045B01 gene	1580 bp upstream
Gm3704	predicted gene 3704	within coordinates
Gm42906	predicted gene 42906	1627 bp upstream
Rr378823	regulatory region 378823	within coordinates
Tssr54686	transcription start site region 54686	1628 bp upstream
Tssr54687	transcription start site region 54687	1603 bp upstream