rs33590234 SNP Detail

Summary

• ID
  rs33590234
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:166836792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTTTAAATC TCTTCCAACA CTTCCAATTC TCAAGAATTA
  CCGCTACTCA GCCTGGTCTA CAGCACAAGC TTCTTCTTCC AGGAGAGCCA GGACTGTGCC
  R
  AGAAACCACG TCTCAAGCAA GCAAGCAAGC AAGCAAGCAA ACAGAATTAT TACAGCTACA
  AGCAATTGAA AACAGTGACC TTAAAAAAGG CATACAATA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45296736	mCV23755381	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33590234					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:166836792 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12728	CpG island 12728	378 bp proximal
Rr56101	regulatory region 56101	within coordinates
Rr397498	regulatory region 397498	1393 bp upstream
Stau1	staufen double-stranded RNA binding protein 1	within coordinates
Tssr27718	transcription start site region 27718	1226 bp downstream
Tssr27719	transcription start site region 27719	1275 bp downstream
Tssr27720	transcription start site region 27720	1334 bp downstream
Tssr27721	transcription start site region 27721	1349 bp downstream
Tssr27722	transcription start site region 27722	1387 bp downstream