rs33590431 SNP Detail

Summary

• ID
  rs33590431
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84851590 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAATATGAGG GGAGATGCCT AGTCTTACTT GATATGCCGT
  GTTTGGGTGA TGTCCCTGGG AGGCCTGCCC TTTTCTGAAG AGAAATGGAG GAGTGGATGT
  R
  GAGGGCATTC TACTCTTTTG AAATGGAACT AACTCTCCCA TTACTCATCA TTTAAGATAC
  AAACTACGTG ACTCACAATT CTATTATATA ATCATAAGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss39554437	mCV24484109	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss146139111	ENSMUSSNP4590519	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs33590431					SNP	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84851590 () rs orientation: forward

Symbol	Name	Function Class
4930500A05Rik	RIKEN cDNA 4930500A05 gene	within coordinates
Gm64006	predicted gene, 64006	1918 bp downstream
Plekhh2	pleckstrin homology domain containing, family H (with MyTH4 domain) member 2	within coordinates
Tssr149687	transcription start site region 149687	901 bp upstream
Tssr149688	transcription start site region 149688	890 bp upstream