rs33590998 SNP Detail

Summary

• ID
  rs33590998
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:59956784 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTAAATGC TTGTGATGTT
  CATGGTGTGA ATCAATAATA TTCAAATGAA TAAACACTAA GTTCTTTTAC AGTTATTTGT
  ATAATCTGTA AGCCGTAATC TCATTTTTTT TTCTAGTTTC GGTTAAGAAA AAAAAAAAAG
  CTAGTTAAAC TGTAAGAACT AAACACTTTA AAAGACTAAT AGCCCATTAC CAACTAAACG
  Y
  GCTGTGCTCC ATCAGAGCCC CAGAATGTCA GCTGGCTGTC TCAATTTTTA ACCTTCCACT
  CCCCAATTCC CTTCAACCAA TCAAGTTAAA CTAAAGGCAA AGAACACCCC GTTCCCTCCA
  ACAGTGTACC CGCAGTCTCC TAAAAACGAG TTAAAAAAAA AAAAAAAACC CCTTAACCTA
  GGTACACGTT ATTACCCACG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss45296651	mCV25043962	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss146647249	ENSMUSSNP2215094	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs33590998					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:59956784 () rs orientation: forward

Symbol	Name	Function Class
Baz2b	bromodomain adjacent to zinc finger domain, 2B	within coordinates
Cpgi11675	CpG island 11675	729 bp distal
Gm13620	predicted gene 13620	621 bp downstream
Rr557597	regulatory region 557597	1334 bp distal
Rr557598	regulatory region 557598	754 bp distal
Rr557599	regulatory region 557599	253 bp distal
Rr557600	regulatory region 557600	748 bp proximal
Tssr24181	transcription start site region 24181	842 bp upstream
Tssr24182	transcription start site region 24182	822 bp upstream
Tssr24183	transcription start site region 24183	665 bp upstream
Tssr24184	transcription start site region 24184	617 bp upstream