rs33591370 SNP Detail

Summary

• ID
  rs33591370
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142949212 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAA TTGAAGGGGT GAGAATCTGA
  Y
  GGGAACTTGG GGTCACACAC AGTCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45797371	mCV23387563	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	T	C
ss144594708	ENSMUSSNP5907567	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33591370					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142949212 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16967	CpG island 16967	1933 bp distal
Cpgi16968	CpG island 16968	943 bp distal
Fscn1	fascin actin-bundling protein 1	within coordinates
Gm72694	predicted gene, 72694	within coordinates
Rr378736	regulatory region 378736	within coordinates
Rr624075	regulatory region 624075	1612 bp distal
Rr624076	regulatory region 624076	980 bp proximal
Tssr49618	transcription start site region 49618	221 bp upstream