rs33592874 SNP Detail

Summary

• ID
  rs33592874
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:147019921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATCCACA GATGACCAGA
  TTGTGCTCCC AGGCCTGAGT CAGTCGCCCG ACCTGAAATT GTTTTCTTAT CCAATCGCTC
  CACCTTGCGG ACACTATGGG CACCGCAGCT TCGATCCTGG CATCCATCCG TCGGTTTTGA
  AATGCTGGTT TAAGAAAGTA AAAAGATCAG TGTCTGGAGC GCCAAGGTGG ACTGATTTCA
  Y
  GCTTGTTTGT TTTGTTTGGG TGTTTGAGGG GAGTTCAGGG GGGTTTAATG ATTGAGGAGA
  TGCTGAGGAA GATAATCTTC TGGGCTCCCA GTCTACTGCG ATGCCCTCCA ACTTCTTGGA
  AAGGCTGTGG GCAGAGATGG AAGGCATCCC GACTCGTGTA TCTCTTTCAT TTTGGATGCC
  CCACCCCACA CCGCTGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
ss45296929	mCV22638127	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	T
ss147881221	ENSMUSSNP5688291	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J
rs33592874					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:147019921 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12376	CpG island 12376	292 bp proximal
Cpgi12377	CpG island 12377	641 bp proximal
Nkx2-2	NK2 homeobox 2	within coordinates
Rr566759	regulatory region 566759	within coordinates
Rr566760	regulatory region 566760	106 bp distal
Rr566761	regulatory region 566761	267 bp proximal
Rr566762	regulatory region 566762	955 bp proximal