rs33593271 SNP Detail

Summary

• ID
  rs33593271
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:114634799 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTTATATTC TAAGAGCCTA TAACTTCTGG TTGACCACAA
  AAACAAGTTA TCAAAACACC TAGAAGTCAC TTAAGACTTA AGACTGTGTA CTTTCCTATA
  Y
  TGTTGCAGAA TCTTGTGTTT CCTGTGGCCT TGGCCCTGCA GAGATGCTTC AAAGCCTTAT
  TAAAAAGTCT GGGTACCCAT GAACCCCTAC TATACTGAGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss47317573	NES11379905	PERLEGEN	MM_PANEL2	f	SNP	C	T	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs33593271					SNP	C	T	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47317573	NES11379905	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:114634799 () rs orientation: forward

Symbol	Name	Function Class
Gm46322	predicted gene, 46322	44 bp upstream
Igh	immunoglobulin heavy chain complex	within coordinates
Ighv1-17-1	immunoglobulin heavy variable V1-17-1	789 bp downstream