rs33593978 SNP Detail

Summary

• ID
  rs33593978
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:11724924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTTATTA GAGCACTTAG
  GCTCCTGGGA TGAAGCAATC TGCCCTGGTC CCTACCAAAA GACACAGGGA AGCTGGGTGG
  TATGTTCTCC TTACAGAGCC TATGGGATTC TGCCTTCCAG AAGACCTTTG AGAGAAATTC
  CATTGGCAAT ACAGACTTAC AAAGGATGCT TCTGGTTGTA ATGCTTGAAG TGCTTAAACC
  W
  GTGCTGATGG CCAGACCCTC TCCATGTCTG AGCCCATAAG AGTATTGCAT GTTCCTTAGG
  CTGGTTTGGG GAATTTGAGT TTGAATGTAT TTAAGCCAAG TCTGTCTCAT TCTTTCCCTG
  AATACCTCCA TTGTAATGGA ATTTAACCCT TAACTACAGC CATAGCAATA TTTCCAATCC
  CATACGTTCT TCCAGCACCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46833069	NES10981974	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33593978					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46833069	NES10981974	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:11724924 () rs orientation: forward

Symbol	Name	Function Class
Rr2687	regulatory region 2687	677 bp proximal
Rr6518	regulatory region 6518	824 bp proximal