rs33593981 SNP Detail

Summary

• ID
  rs33593981
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:11724960 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTGCCCT GGTCCCTACC
  AAAAGACACA GGGAAGCTGG GTGGTATGTT CTCCTTACAG AGCCTATGGG ATTCTGCCTT
  CCAGAAGACC TTTGAGAGAA ATTCCATTGG CAATACAGAC TTACAAAGGA TGCTTCTGGT
  TGTAATGCTT GAAGTGCTTA AACCAGTGCT GATGGCCAGA CCCTCTCCAT GTCTGAGCCC
  R
  TAAGAGTATT GCATGTTCCT TAGGCTGGTT TGGGGAATTT GAGTTTGAAT GTATTTAAGC
  CAAGTCTGTC TCATTCTTTC CCTGAATACC TCCATTGTAA TGGAATTTAA CCCTTAACTA
  CAGCCATAGC AATATTTCCA ATCCCATACG TTCTTCCAGC ACCTTGCTAC TCCCATGAAG
  AGGTAGGGTC TTTTTTCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46833072	NES10981976	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33593981					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46833072	NES10981976	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:11724960 () rs orientation: forward

Symbol	Name	Function Class
Rr2687	regulatory region 2687	641 bp proximal
Rr6518	regulatory region 6518	788 bp proximal