rs33594054 SNP Detail

Summary

• ID
  rs33594054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:127952294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCATAATG AGGTGGTATT
  AAGATTGAAC AAAACATGAA CTTCCTCAGC TGTGGACCTT TCCAGTGAAA ATGTGTCTCG
  AAAGAAAACA TGAAAGAAAA AGGCACATTG AAGATAAGTC ATTCTGACAC TGTGGATGCC
  CTGTCTTCTG TGGACTGACC CCAGGTGCTT GGGAAGGTCT TTGGCCTCTA GAGTCTGGAC
  R
  ATAGCTTCAG CATGCATCCC TCAGGTGAAG GATGTGCATA CCTTTATAAG AAGGGTATTT
  CAGTCATGAA AGCTATAATG GCAGGACACC CTTTGAGGTA GAGTAGTTTA TGAACGCAAG
  AAGGTATGTT GCCTCTCTCC ATAGCTTCAT GTTCTTGTAC TCCATGTAGG TTTTGCAGTA
  TGAATGATAC AAGAATTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	PWD/PhJ	WSB/EiJ
ss46294454	mCV25022231	ABI	CRAMUS_MOUSE	f	SNP	G	G	A		A
ss50637867	NES14038261	PERLEGEN	MM_PANEL2	f	SNP			A	G		A	A
ss145900516	ENSMUSSNP3722288	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BTBR T<+> Itpr3/J	C57BL/6J	PWD/PhJ	WSB/EiJ
rs33594054					SNP	G	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50637867	NES14038261	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:127952294 () rs orientation: forward

Symbol	Name	Function Class
D8Mit326	DNA Segment, Chr 8, Massachusetts Institute of Technology 326	153 bp proximal
Pard3	par-3 family cell polarity regulator	within coordinates
Rr673393	regulatory region 673393	1933 bp proximal