rs33594233 SNP Detail

Summary

• ID
  rs33594233
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:20697994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GAGTTTTTAA CAGCATAGAG TTTATTGAAC ATCTTAGAAA
  ATATCATTCT CTATTTACTT ATGCAATTGC AATAAAACAA AGTAAAACAT ATTATTTAAT
  Y
  TTATATTATT TGATCATTGA ATTAATTTGA CAGAAAAACA GCCTTCATAT GTCTGAATTA
  TTACTGAATG TGATATTTTA GTTGGATGCA GACATCTTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39554590	mCV25305602	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss145277508	ENSMUSSNP4242064	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss325320705	CHEV_17_20614696	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33594233					SNP	C	C	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:20697994 () rs orientation: forward

Symbol	Name	Function Class
D17Dcr34	DNA Segment, Chr 17, Derry C. Roopenian 34	830 bp distal
D17Jcs125	DNA segment, Chr 17, John C. Schimenti 125	807 bp distal
Vmn2r108	vomeronasal 2, receptor 108	within coordinates