rs33594562 SNP Detail

Summary

• ID
  rs33594562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:11726162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGCCATGA TGACTAGCAT
  CCTGGAACAA ACCAGGGGTT TGTGATGCTG GGATGTGAGA GCTGTGGTAC CACTGTCCAT
  TTTCTGCTGC TATAACACAG TGTTCAAGGC TGGAAAGTCA CATATGGAGG GGGGAAAACG
  TTTATTTTGC CCATGGTTCT GGTGACTTGA AAGTTCAAGC AACATGGCAC TAGCATCCTG
  R
  CAAGGACAAG GACCCCCTGT TGGCATCACC AAGGGACAGC GCAGCAGAAA GGGAAGTGCT
  GTGAGCAAGA GAGGGAATGA GAGAATAGAG GATGACTCCT GCTTTTCTAT CAGCCTGTTC
  TCAACTGGGC ATGATAGCAG AACCTGGGAG GAGGCTGGAG CACAGTGATC TTGAGTTAGA
  GGCGAGCCTT GGCACTACAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46833084	NES10981676	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33594562					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46833084	NES10981676	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:11726162 () rs orientation: forward

Symbol	Name	Function Class
Rr2687	regulatory region 2687	within coordinates
Rr5305	regulatory region 5305	1039 bp proximal
Rr6518	regulatory region 6518	195 bp distal