rs33594719 SNP Detail

Summary

• ID
  rs33594719
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:151926306 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCTGCCA GCTGTCTCAT
  GGCAGAATAG GTCATCCAGC CTGGGCCGCC TTGTCTTGTT GGCTGTGTGG AAATCAGGAA
  GGATGGCTCT TCTAGCCTTT CAACAAGAAA ACATAGGGTC TGTTCTGCCT TGCTTTTCAA
  GGGCCTCTTC CCTGATGGGG TGTGGTCCAG ACTGTGCAAT AGGGCTCCCT GCACGAGTAA
  R
  TGTTCTGAGG GTCCTCAGAG AGCCTGCCGG CTCCTGGTGG CCCGTTGTTT CTCCGCTCTG
  CCGGAAATAA CCTTGCTGAG CGTTTGAGGG AAGTGTGAAA AATTGCTGAG CTGACAGTTT
  TTCTCTCTCT CCCAGCATGT GTAAGTGTGC TGGGTAAACA AGGAGAAAGA AGGGAGGGGG
  AGATGAAGAG AAAGAGGGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45297845	mCV24884762	ABI	CRAMUS_MOUSE	f	SNP	G	A	A	A
ss147961601	ENSMUSSNP2787486	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A		A
ss320562101	CHEV_2_151910122	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33594719					SNP	G	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:151926306 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12435	CpG island 12435	1715 bp distal
Rr567277	regulatory region 567277	803 bp distal
Rr567278	regulatory region 567278	within coordinates
Rr567279	regulatory region 567279	1759 bp proximal
Scrt2	scratch family zinc finger 2	within coordinates