rs33595581 SNP Detail

Summary

• ID
  rs33595581
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:11727078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGACCCAAA GAGACAACAT
  CGCTCTCAAG ATCACCATTC AGCCAGCTGT GACTGTTATC TTGCTCAGGA GCCCAAGGAA
  GGCTATTGTT GGAAAAAAAA AAATAAAAGC TTTCTCTCTT TAGGCCACCT GAGCGTGGGG
  AGGTCAAATT AAAACCCACC CAAACAAGAC TTGGCTCAGC TCCAGGCTTG GCGATAGAAA
  R
  GGGGAAGAAG GCAGAGAAGC ATTTACAAAT AAATAATCCA GTTGACAAGC TGGGACTTGC
  TCTCTGGGGC CACTTCCCTG CAGGAGGCAC ACGAGGAGGG GGCAGACAGG GGTGGGGAGA
  GGGCAGGAGT CTGTCCAAAG GAAGACAAAC TGTGTGCCTC TCCTTTTTGG ATCCTGCCGC
  CTCTCTCAAC AACTCTTAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46833093	NES10981641	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33595581					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46833093	NES10981641	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:11727078 () rs orientation: forward

Symbol	Name	Function Class
DXMit54	DNA segment, Chr X, Massachusetts Institute of Technology 54	1719 bp proximal
Gm52427	predicted gene, 52427	1098 bp downstream
Rr2687	regulatory region 2687	878 bp distal
Rr5305	regulatory region 5305	123 bp proximal
Rr6518	regulatory region 6518	1111 bp distal