rs33595701 SNP Detail

Summary

• ID
  rs33595701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138104673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGCTTGA GTAAGTTTCC
  CAAGCCTTGT GTTACAGATG CATCAAATTG GGTTGGAAAC CTCAAGGTCA GTCATTCTCT
  GAGTTTGACT GGTTGTGGCT TTCTATAATG TTCTCCCTCT ACTACCAAAA GAAGACTGAA
  TGAATGATGG TATTCTCAGG GAGTTTGCCA ATAAGAACAT GCCTACAGTA TTTTAAAGGT
  Y
  CCTGTGAATT CAACAGTACA ATTAAATGGA TCTAGTAATA TTTTGCTATC TACTTTCATT
  TAAAAACAAA AGAATATACA CATAACTTAG TGTTTGAAAT ATGTAGATAA TGGGAGACAA
  GTAGACACAG TGATTATAAT CCCTAATTAT GAAATACCAT AGGGTCTTGT GTTTTCGTGT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49505137	NES12854844	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33595701					SNP	T	T	T	T	C	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49505137	NES12854844	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138104673 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	1227 bp upstream
Rr396335	regulatory region 396335	1407 bp downstream
Rr396336	regulatory region 396336	447 bp downstream
Rr419677	regulatory region 419677	1679 bp distal
Rr419678	regulatory region 419678	1139 bp distal
Tssr233	transcription start site region 233	1310 bp upstream
Tssr9154	transcription start site region 9154	1298 bp downstream
Tssr9155	transcription start site region 9155	1235 bp downstream
Tssr14021	transcription start site region 14021	1737 bp upstream
Tssr14022	transcription start site region 14022	1681 bp upstream
Tssr14023	transcription start site region 14023	1624 bp upstream
Tssr14024	transcription start site region 14024	1291 bp upstream
Tssr14025	transcription start site region 14025	1275 bp upstream
Tssr14026	transcription start site region 14026	1247 bp upstream
Tssr14027	transcription start site region 14027	1231 bp upstream
Tssr14028	transcription start site region 14028	1195 bp upstream
Tssr14029	transcription start site region 14029	1171 bp upstream
Tssr14030	transcription start site region 14030	1023 bp upstream
Tssr14031	transcription start site region 14031	999 bp upstream