rs33595874 SNP Detail

Summary

• ID
  rs33595874
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:153472985 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACCTTACATC CAGGAACAAA TAAACCAGTC CCCAGCAGAG AGAATGAGGC AGGAGAATCA
  CAAACTTGTA GTCTAGGCTA CATGGCTAAA TTATTTATTT ATTTATTTAT TTATTTATTT
  ATTTATTAAA GAGCTGACTG AGCCTGTTGG CACAGGTATA TAAATTCAGG TCCTCAGGAG
  GTTGAGGAAG GAGGATTATA AATTCAAGGC CAGACTGAGC AAATTATTGA GAATGGGACT
  CAAACAAGGC CAGGCATAAT GAATGGTACA CGCCTAGAAT CCTAGCCTTG GAAGGCAGAG
  W
  GGAGGATGGT TTTTAGTTCC ATACCAGTCA GGGTTACAAG ACCTTATCTA AAAATAAAAG
  AGAAAACCAC AACAGCAAGC CACCACACAG AACCTAGTGG GGATTAATAG ATATCTGACC
  ACAGTGTCAC ACACCTGGAA TCGCAGCACT TGGGGAAGCT GAGGCAGGGA GAACTTAAAT
  CTGAAGACAG CCAGGGGACA GAGAGACTGT CTCAAAGCCA AAAAAGAAAA ATCTTGGGGC
  TCGTAAAATG GCTCAGCTGA CAAAGATGCT TGCTTCAATC CCTGGAACCT ACACAAAGAA
                                                                   
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45297062	mCV23862295	ABI	CRAMUS_MOUSE	f	SNP	T	T	A	T
ss147999435	ENSMUSSNP5805104	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33595874					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:153472985 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Commd7	COMM domain containing 7			Intron
				Noncoding-Transcript-Variant
Cpgi12491	CpG island 12491			1233 bp proximal
Rr567709	regulatory region 567709			609 bp distal
Rr567710	regulatory region 567710			1665 bp proximal
Tssr26915	transcription start site region 26915			1614 bp downstream
Tssr26916	transcription start site region 26916			1710 bp downstream