rs33596444 SNP Detail

Summary

• ID
  rs33596444
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:11727486 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCAGCTCT TAATTACCTA
  CAACAAGAGA GACCAGGGAA AACACAGATA AATGAAATCC ACAGATAATC CCCAAACCCC
  AATTTGGTCG ATAACATCAT CCAGCATCCC CAAGTAACCT CTTGCCAGGG CTCCGCTCTC
  CTAACAAGCA GCAGGACAGA ATGGTCCCCA GGTCCCCGGC TTTCTTTGCC TTCGTCGTGA
  Y
  GTGCTTTCCA TTAGTACAGG GGAAAAGGCA GGTGGGCGCT AAATAATTCC CAATTGGATA
  CTCTTTCTAC CATCCCTACG CTGTGCTGCC AGGGCCTCTG GCCAAGTGCC AGCCTCCAAG
  CCTCCTGGCG CTGGACCGTT TTCATTGTCT GTTTGCCCAG CAAATAGAAG TGCTGGCTGA
  GAATTCATAG CACCTTGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46833096	NES10981642	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33596444					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46833096	NES10981642	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:11727486 () rs orientation: forward

Symbol	Name	Function Class
DXMit54	DNA segment, Chr X, Massachusetts Institute of Technology 54	1311 bp proximal
Gm52427	predicted gene, 52427	690 bp downstream
Rr2687	regulatory region 2687	1286 bp distal
Rr5305	regulatory region 5305	within coordinates
Rr5306	regulatory region 5306	1915 bp proximal
Rr6518	regulatory region 6518	1519 bp distal