rs33596535 SNP Detail

Summary

• ID
  rs33596535
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138104631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCTTTTA CACTCTTTCC
  ACTCCCTCTT CTGTGAAGTT TTCTGAGCTT GAGTAAGTTT CCCAAGCCTT GTGTTACAGA
  TGCATCAAAT TGGGTTGGAA ACCTCAAGGT CAGTCATTCT CTGAGTTTGA CTGGTTGTGG
  CTTTCTATAA TGTTCTCCCT CTACTACCAA AAGAAGACTG AATGAATGAT GGTATTCTCA
  R
  GGAGTTTGCC AATAAGAACA TGCCTACAGT ATTTTAAAGG TTCCTGTGAA TTCAACAGTA
  CAATTAAATG GATCTAGTAA TATTTTGCTA TCTACTTTCA TTTAAAAACA AAAGAATATA
  CACATAACTT AGTGTTTGAA ATATGTAGAT AATGGGAGAC AAGTAGACAC AGTGATTATA
  ATCCCTAATT ATGAAATACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49505141	NES12854841	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33596535					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49505141	NES12854841	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138104631 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	1185 bp upstream
Rr396335	regulatory region 396335	1365 bp downstream
Rr396336	regulatory region 396336	405 bp downstream
Rr419677	regulatory region 419677	1637 bp distal
Rr419678	regulatory region 419678	1097 bp distal
Tssr233	transcription start site region 233	1268 bp upstream
Tssr9154	transcription start site region 9154	1256 bp downstream
Tssr9155	transcription start site region 9155	1193 bp downstream
Tssr14021	transcription start site region 14021	1695 bp upstream
Tssr14022	transcription start site region 14022	1639 bp upstream
Tssr14023	transcription start site region 14023	1582 bp upstream
Tssr14024	transcription start site region 14024	1249 bp upstream
Tssr14025	transcription start site region 14025	1233 bp upstream
Tssr14026	transcription start site region 14026	1205 bp upstream
Tssr14027	transcription start site region 14027	1189 bp upstream
Tssr14028	transcription start site region 14028	1153 bp upstream
Tssr14029	transcription start site region 14029	1129 bp upstream
Tssr14030	transcription start site region 14030	981 bp upstream
Tssr14031	transcription start site region 14031	957 bp upstream