rs33596538 SNP Detail

Summary

• ID
  rs33596538
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138103835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGACTCTCC TCTGTGCATC
  AGTGAATTCT GCTTCAAGAC AGGAGTGCCC CTACATTTGG GGTTGCTCTG TGCTATTTAC
  CAATGAAAGA AGAGCAATGA AAACCAAGCC TTGTCTTTTA CAAAGTTAAC TTGTTTCTTT
  TGATCATAGT ATTTCCCCAC CCCACCACAC ACATCCCTGA TCAATTTCAC ATGTATATTG
  M
  ATTTGCATTA TTTCCCCCCA CTCTCTCTTT TCCCCAGAAC CCTCCTATGT CCAAATACAC
  AGATTCATCC CTAATTCATA CCATTTATTC TTTAACTTTT ATTGCTACAC ACACACCTAC
  AAATAAACGC ATCCCTACAC ACACATACAC TCATACACAC ACACCCCTAC ACATGTATAC
  ACACACTCAC ACACACACAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49505145	NES12855100	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	C	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33596538					SNP	A	A	A	A	C	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49505145	NES12855100	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138103835 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	389 bp upstream
Rr396335	regulatory region 396335	569 bp downstream
Rr396336	regulatory region 396336	91 bp upstream
Rr419677	regulatory region 419677	841 bp distal
Rr419678	regulatory region 419678	301 bp distal
Tssr233	transcription start site region 233	472 bp upstream
Tssr9153	transcription start site region 9153	1639 bp downstream
Tssr9154	transcription start site region 9154	460 bp downstream
Tssr9155	transcription start site region 9155	397 bp downstream
Tssr14018	transcription start site region 14018	1793 bp upstream
Tssr14019	transcription start site region 14019	1758 bp upstream
Tssr14020	transcription start site region 14020	1749 bp upstream
Tssr14021	transcription start site region 14021	899 bp upstream
Tssr14022	transcription start site region 14022	843 bp upstream
Tssr14023	transcription start site region 14023	786 bp upstream
Tssr14024	transcription start site region 14024	453 bp upstream
Tssr14025	transcription start site region 14025	437 bp upstream
Tssr14026	transcription start site region 14026	409 bp upstream
Tssr14027	transcription start site region 14027	393 bp upstream
Tssr14028	transcription start site region 14028	357 bp upstream
Tssr14029	transcription start site region 14029	333 bp upstream
Tssr14030	transcription start site region 14030	185 bp upstream
Tssr14031	transcription start site region 14031	161 bp upstream