rs33596539 SNP Detail

Summary

• ID
  rs33596539
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138103688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATGGTAT GCCTATTTCC
  TCGGTGATGT GGCTTTCCTA TGCAAAACTA CCTTCACTGG CTTTAAAGAG CCTCCCAATT
  TGTTTTTCAG GGCTGCTGGT GGTGGTTTCA TTGAGTTTTA TGCAGGTATC TCCTTGAGTG
  GTGGAGTGAG ACTCTCCTCT GTGCATCAGT GAATTCTGCT TCAAGACAGG AGTGCCCCTA
  Y
  ATTTGGGGTT GCTCTGTGCT ATTTACCAAT GAAAGAAGAG CAATGAAAAC CAAGCCTTGT
  CTTTTACAAA GTTAACTTGT TTCTTTTGAT CATAGTATTT CCCCACCCCA CCACACACAT
  CCCTGATCAA TTTCACATGT ATATTGAATT TGCATTATTT CCCCCCACTC TCTCTTTTCC
  CCAGAACCCT CCTATGTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49505147	NES12855099	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33596539					SNP	C	C	C	C	T	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49505147	NES12855099	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138103688 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	242 bp upstream
Rr396335	regulatory region 396335	422 bp downstream
Rr396336	regulatory region 396336	238 bp upstream
Rr419677	regulatory region 419677	694 bp distal
Rr419678	regulatory region 419678	154 bp distal
Tssr233	transcription start site region 233	325 bp upstream
Tssr9153	transcription start site region 9153	1492 bp downstream
Tssr9154	transcription start site region 9154	313 bp downstream
Tssr9155	transcription start site region 9155	250 bp downstream
Tssr14018	transcription start site region 14018	1646 bp upstream
Tssr14019	transcription start site region 14019	1611 bp upstream
Tssr14020	transcription start site region 14020	1602 bp upstream
Tssr14021	transcription start site region 14021	752 bp upstream
Tssr14022	transcription start site region 14022	696 bp upstream
Tssr14023	transcription start site region 14023	639 bp upstream
Tssr14024	transcription start site region 14024	306 bp upstream
Tssr14025	transcription start site region 14025	290 bp upstream
Tssr14026	transcription start site region 14026	262 bp upstream
Tssr14027	transcription start site region 14027	246 bp upstream
Tssr14028	transcription start site region 14028	210 bp upstream
Tssr14029	transcription start site region 14029	186 bp upstream
Tssr14030	transcription start site region 14030	38 bp upstream
Tssr14031	transcription start site region 14031	14 bp upstream