rs33596540 SNP Detail

Summary

• ID
  rs33596540
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138103606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCTG GTGGTGGTTT CATTGAGTTT
  Y
  ATGCAGGTAT CTCCTTGAGT GGTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49505149	NES12855098	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	C	T		C	C	T	C		T
ss320000114	CHEV_1_140072445	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33596540					SNP	T	T	T	T	C	T	C	T	C	T	C	C	C	T	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49505149	NES12855098	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138103606 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	160 bp upstream
Rr396335	regulatory region 396335	340 bp downstream
Rr396336	regulatory region 396336	320 bp upstream
Rr419677	regulatory region 419677	612 bp distal
Rr419678	regulatory region 419678	72 bp distal
Tssr233	transcription start site region 233	243 bp upstream
Tssr9153	transcription start site region 9153	1410 bp downstream
Tssr9154	transcription start site region 9154	231 bp downstream
Tssr9155	transcription start site region 9155	168 bp downstream
Tssr14018	transcription start site region 14018	1564 bp upstream
Tssr14019	transcription start site region 14019	1529 bp upstream
Tssr14020	transcription start site region 14020	1520 bp upstream
Tssr14021	transcription start site region 14021	670 bp upstream
Tssr14022	transcription start site region 14022	614 bp upstream
Tssr14023	transcription start site region 14023	557 bp upstream
Tssr14024	transcription start site region 14024	224 bp upstream
Tssr14025	transcription start site region 14025	208 bp upstream
Tssr14026	transcription start site region 14026	180 bp upstream
Tssr14027	transcription start site region 14027	164 bp upstream
Tssr14028	transcription start site region 14028	128 bp upstream
Tssr14029	transcription start site region 14029	104 bp upstream
Tssr14030	transcription start site region 14030	28 bp downstream
Tssr14031	transcription start site region 14031	45 bp downstream