rs33596793 SNP Detail

Summary

• ID
  rs33596793
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164617594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAA GGAGGAAGAG GTGCTGTACC
  R
  TGCTTGCCCG CAAGCCAGAT TGAGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45297672	mCV24935967	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss148231962	ENSMUSSNP3945590	ENSEMBL	ENSEMBL_Sanger	f	SNP	A		G
ss320606915	CHEV_2_164601174	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33596793					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164617594 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12669	CpG island 12669	1230 bp proximal
Rr569698	regulatory region 569698	1025 bp distal
Tnnc2	troponin C2, fast	1487 bp downstream
Tssr21644	transcription start site region 21644	1811 bp upstream
Tssr21645	transcription start site region 21645	1845 bp upstream
Tssr21646	transcription start site region 21646	1883 bp upstream