rs33597678 SNP Detail

Summary

• ID
  rs33597678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:138102654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAATTGCTTT AGCTACATTC
  CTGAACAGTT TCCAAATAAA GAGAGACAAA GAGAGTCAAC TTTCCTATTA AAGTGTGATC
  TTTCCCCGAA ACATTTATGT ATTTTGAACA GAAGCAGTGT ATGCTGCCCT CCACTAGGCC
  TTGTTTCTCT GAACAACGGC AAACTTGAAC ATGGAGTAAC GAATCTTCTT ACTTTCAATA
  Y
  CCATCACACG CAACTTTTAA AAATAGCCAT TTCAACCTAG CCTTTGCCAC AAAATCAACA
  AAATACAAGG AAGTAAAAAT GAATATGGGT GTGCTTACCT GTGACAAAGA CTTCTGTGTC
  CAGAAGGGCA AATCCAAAGG CCAGAAGTTT GAGCCACAAA CCCATGGTCA TATCTGGAGA
  TCAGCTGTGC CCCTAAGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49505161	NES12855088	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33597678					SNP	T	T	T	T	C	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49505161	NES12855088	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138102654 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	Intron
Rr396335	regulatory region 396335	311 bp upstream
Rr396336	regulatory region 396336	1272 bp upstream
Rr419676	regulatory region 419676	1782 bp distal
Rr419677	regulatory region 419677	within coordinates
Rr419678	regulatory region 419678	341 bp proximal
Tssr233	transcription start site region 233	702 bp downstream
Tssr9153	transcription start site region 9153	458 bp downstream
Tssr9154	transcription start site region 9154	712 bp upstream
Tssr9155	transcription start site region 9155	775 bp upstream
Tssr14018	transcription start site region 14018	612 bp upstream
Tssr14019	transcription start site region 14019	577 bp upstream
Tssr14020	transcription start site region 14020	568 bp upstream
Tssr14021	transcription start site region 14021	265 bp downstream
Tssr14022	transcription start site region 14022	322 bp downstream
Tssr14023	transcription start site region 14023	367 bp downstream
Tssr14024	transcription start site region 14024	710 bp downstream
Tssr14025	transcription start site region 14025	737 bp downstream
Tssr14026	transcription start site region 14026	755 bp downstream
Tssr14027	transcription start site region 14027	776 bp downstream
Tssr14028	transcription start site region 14028	802 bp downstream
Tssr14029	transcription start site region 14029	826 bp downstream
Tssr14030	transcription start site region 14030	980 bp downstream
Tssr14031	transcription start site region 14031	997 bp downstream