rs33597682 SNP Detail

Summary

• ID
  rs33597682
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138102580 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATATTTTG ATCAAAAGCA
  TTAAAAGCTG ACTTAATTAA CAATTCCTCT AACCATAGCA GATGCAGGTT GGATCAATTG
  CTTTAGCTAC ATTCCTGAAC AGTTTCCAAA TAAAGAGAGA CAAAGAGAGT CAACTTTCCT
  ATTAAAGTGT GATCTTTCCC CGAAACATTT ATGTATTTTG AACAGAAGCA GTGTATGCTG
  Y
  CCTCCACTAG GCCTTGTTTC TCTGAACAAC GGCAAACTTG AACATGGAGT AACGAATCTT
  CTTACTTTCA ATATCCATCA CACGCAACTT TTAAAAATAG CCATTTCAAC CTAGCCTTTG
  CCACAAAATC AACAAAATAC AAGGAAGTAA AAATGAATAT GGGTGTGCTT ACCTGTGACA
  AAGACTTCTG TGTCCAGAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49505165	NES12855086	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33597682					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49505165	NES12855086	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138102580 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	within coordinates
Rr396335	regulatory region 396335	385 bp upstream
Rr396336	regulatory region 396336	1346 bp upstream
Rr419676	regulatory region 419676	1708 bp distal
Rr419677	regulatory region 419677	within coordinates
Rr419678	regulatory region 419678	415 bp proximal
Tssr233	transcription start site region 233	776 bp downstream
Tssr9153	transcription start site region 9153	384 bp downstream
Tssr9154	transcription start site region 9154	786 bp upstream
Tssr9155	transcription start site region 9155	849 bp upstream
Tssr14018	transcription start site region 14018	538 bp upstream
Tssr14019	transcription start site region 14019	503 bp upstream
Tssr14020	transcription start site region 14020	494 bp upstream
Tssr14021	transcription start site region 14021	339 bp downstream
Tssr14022	transcription start site region 14022	396 bp downstream
Tssr14023	transcription start site region 14023	441 bp downstream
Tssr14024	transcription start site region 14024	784 bp downstream
Tssr14025	transcription start site region 14025	811 bp downstream
Tssr14026	transcription start site region 14026	829 bp downstream
Tssr14027	transcription start site region 14027	850 bp downstream
Tssr14028	transcription start site region 14028	876 bp downstream
Tssr14029	transcription start site region 14029	900 bp downstream
Tssr14030	transcription start site region 14030	1054 bp downstream
Tssr14031	transcription start site region 14031	1071 bp downstream