rs33598656 SNP Detail

Summary

• ID
  rs33598656
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138102562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCGTGATTT TAAACCTTTC
  ATATTTTGAT CAAAAGCATT AAAAGCTGAC TTAATTAACA ATTCCTCTAA CCATAGCAGA
  TGCAGGTTGG ATCAATTGCT TTAGCTACAT TCCTGAACAG TTTCCAAATA AAGAGAGACA
  AAGAGAGTCA ACTTTCCTAT TAAAGTGTGA TCTTTCCCCG AAACATTTAT GTATTTTGAA
  Y
  AGAAGCAGTG TATGCTGCCC TCCACTAGGC CTTGTTTCTC TGAACAACGG CAAACTTGAA
  CATGGAGTAA CGAATCTTCT TACTTTCAAT ATCCATCACA CGCAACTTTT AAAAATAGCC
  ATTTCAACCT AGCCTTTGCC ACAAAATCAA CAAAATACAA GGAAGTAAAA ATGAATATGG
  GTGTGCTTAC CTGTGACAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49505169	NES12924297	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33598656					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49505169	NES12924297	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138102562 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	within coordinates
Rr396335	regulatory region 396335	403 bp upstream
Rr396336	regulatory region 396336	1364 bp upstream
Rr419676	regulatory region 419676	1690 bp distal
Rr419677	regulatory region 419677	within coordinates
Rr419678	regulatory region 419678	433 bp proximal
Tssr233	transcription start site region 233	794 bp downstream
Tssr9153	transcription start site region 9153	366 bp downstream
Tssr9154	transcription start site region 9154	804 bp upstream
Tssr9155	transcription start site region 9155	867 bp upstream
Tssr14018	transcription start site region 14018	520 bp upstream
Tssr14019	transcription start site region 14019	485 bp upstream
Tssr14020	transcription start site region 14020	476 bp upstream
Tssr14021	transcription start site region 14021	357 bp downstream
Tssr14022	transcription start site region 14022	414 bp downstream
Tssr14023	transcription start site region 14023	459 bp downstream
Tssr14024	transcription start site region 14024	802 bp downstream
Tssr14025	transcription start site region 14025	829 bp downstream
Tssr14026	transcription start site region 14026	847 bp downstream
Tssr14027	transcription start site region 14027	868 bp downstream
Tssr14028	transcription start site region 14028	894 bp downstream
Tssr14029	transcription start site region 14029	918 bp downstream
Tssr14030	transcription start site region 14030	1072 bp downstream
Tssr14031	transcription start site region 14031	1089 bp downstream