rs33598660 SNP Detail

Summary

• ID
  rs33598660
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138102410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTAAGAC AACACGGAGA
  GTTTTTAAAG CACCTAATGT GCTCTTCAGC CTTTCTGTAG CTGAGCATTC AAAACCCTAT
  TTTAATAATC ATTAACATTT GAGGAAACAA CCCTTTGTCT GAAGAGACTG GCTTACACAC
  AAGCAAAGCT GTCTCGTGAT TTTAAACCTT TCATATTTTG ATCAAAAGCA TTAAAAGCTG
  R
  CTTAATTAAC AATTCCTCTA ACCATAGCAG ATGCAGGTTG GATCAATTGC TTTAGCTACA
  TTCCTGAACA GTTTCCAAAT AAAGAGAGAC AAAGAGAGTC AACTTTCCTA TTAAAGTGTG
  ATCTTTCCCC GAAACATTTA TGTATTTTGA ACAGAAGCAG TGTATGCTGC CCTCCACTAG
  GCCTTGTTTC TCTGAACAAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49505173	NES12855083	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33598660					SNP	A	A	A	A	G	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49505173	NES12855083	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138102410 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	within coordinates
Rr396335	regulatory region 396335	555 bp upstream
Rr396336	regulatory region 396336	1516 bp upstream
Rr419676	regulatory region 419676	1538 bp distal
Rr419677	regulatory region 419677	within coordinates
Rr419678	regulatory region 419678	585 bp proximal
Tssr233	transcription start site region 233	946 bp downstream
Tssr9152	transcription start site region 9152	1941 bp downstream
Tssr9153	transcription start site region 9153	214 bp downstream
Tssr9154	transcription start site region 9154	956 bp upstream
Tssr9155	transcription start site region 9155	1019 bp upstream
Tssr14018	transcription start site region 14018	368 bp upstream
Tssr14019	transcription start site region 14019	333 bp upstream
Tssr14020	transcription start site region 14020	324 bp upstream
Tssr14021	transcription start site region 14021	509 bp downstream
Tssr14022	transcription start site region 14022	566 bp downstream
Tssr14023	transcription start site region 14023	611 bp downstream
Tssr14024	transcription start site region 14024	954 bp downstream
Tssr14025	transcription start site region 14025	981 bp downstream
Tssr14026	transcription start site region 14026	999 bp downstream
Tssr14027	transcription start site region 14027	1020 bp downstream
Tssr14028	transcription start site region 14028	1046 bp downstream
Tssr14029	transcription start site region 14029	1070 bp downstream
Tssr14030	transcription start site region 14030	1224 bp downstream
Tssr14031	transcription start site region 14031	1241 bp downstream