rs33598662 SNP Detail

Summary

• ID
  rs33598662
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138102329 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGCTCTAC CAGAATTTCC
  ACAGCAGAAT TCATAGGAAG CATTATCTCA GAACTAAAAT GATTAATTCA AAACACATTC
  GATGGTAAGA CAACACGGAG AGTTTTTAAA GCACCTAATG TGCTCTTCAG CCTTTCTGTA
  GCTGAGCATT CAAAACCCTA TTTTAATAAT CATTAACATT TGAGGAAACA ACCCTTTGTC
  Y
  GAAGAGACTG GCTTACACAC AAGCAAAGCT GTCTCGTGAT TTTAAACCTT TCATATTTTG
  ATCAAAAGCA TTAAAAGCTG ACTTAATTAA CAATTCCTCT AACCATAGCA GATGCAGGTT
  GGATCAATTG CTTTAGCTAC ATTCCTGAAC AGTTTCCAAA TAAAGAGAGA CAAAGAGAGT
  CAACTTTCCT ATTAAAGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49505175	NES12855082	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33598662					SNP	T	T	T	T	C	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49505175	NES12855082	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138102329 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	within coordinates
Rr396335	regulatory region 396335	636 bp upstream
Rr396336	regulatory region 396336	1597 bp upstream
Rr419676	regulatory region 419676	1457 bp distal
Rr419677	regulatory region 419677	within coordinates
Rr419678	regulatory region 419678	666 bp proximal
Tssr233	transcription start site region 233	1027 bp downstream
Tssr9152	transcription start site region 9152	1860 bp downstream
Tssr9153	transcription start site region 9153	133 bp downstream
Tssr9154	transcription start site region 9154	1037 bp upstream
Tssr9155	transcription start site region 9155	1100 bp upstream
Tssr14018	transcription start site region 14018	287 bp upstream
Tssr14019	transcription start site region 14019	252 bp upstream
Tssr14020	transcription start site region 14020	243 bp upstream
Tssr14021	transcription start site region 14021	590 bp downstream
Tssr14022	transcription start site region 14022	647 bp downstream
Tssr14023	transcription start site region 14023	692 bp downstream
Tssr14024	transcription start site region 14024	1035 bp downstream
Tssr14025	transcription start site region 14025	1062 bp downstream
Tssr14026	transcription start site region 14026	1080 bp downstream
Tssr14027	transcription start site region 14027	1101 bp downstream
Tssr14028	transcription start site region 14028	1127 bp downstream
Tssr14029	transcription start site region 14029	1151 bp downstream
Tssr14030	transcription start site region 14030	1305 bp downstream
Tssr14031	transcription start site region 14031	1322 bp downstream