rs33599028 SNP Detail

Summary

• ID
  rs33599028
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84770324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTAGGCTCAG TTTTCTTTTC CACAAAGCAG GGGAGGGGGA
  GGGGAGATAA TAATAACTTC TACTTTTTTT TTTTTTGGCT TTGTCAGGAG TATCAGACTG
  R
  ATGCCCGCAA AAGCACAATA CTATGGGATA CATGAGGAGC ACTCAAGTGA ACACTGATCA
  TTTATTGACC GTCTTGTTTG CTTTACCGAA TTCACTTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss46295449	mCV23006066	ABI	CRAMUS_MOUSE	f	SNP	A	A	G	A
ss145369943	ENSMUSSNP1805934	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A		A		G
ss322747218	CHEV_8_86567594	CHEVERUD	SCREENING_POP	f	SNP					A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs33599028					SNP	A	A	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84770324 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20671	CpG island 20671	1001 bp distal
Cpgi20672	CpG island 20672	1053 bp proximal
Il27ra	interleukin 27 receptor, alpha	1106 bp upstream
Rln3	relaxin 3	within coordinates
Rr178108	regulatory region 178108	477 bp proximal
Rr186973	regulatory region 186973	523 bp distal
Rr186974	regulatory region 186974	876 bp proximal
Tssr82060	transcription start site region 82060	1096 bp upstream
Tssr82061	transcription start site region 82061	1287 bp downstream