rs33599304 SNP Detail

Summary

• ID
  rs33599304
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138101978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTACCAG GGATTTCTTT
  GGAAACGAGA GGAGTGAACA TCAGGAAAAA AATAAAATTG AATTCTGATA CAATTAACTA
  TTTTCCCCAT TTAAAAGTAT CTTAGATTAA ACACTACAAG GAGAAATGCC ATCTAGCTGT
  AACTTGATAA TCAACTCATG TCTCAAAGAG AAACTACTCC AGAAATAATT ATTGACCAGA
  Y
  CAGATATGTA AGAAGGACTG AACCTTCAGT AAGCAGTGCC TGCCTGGTCA CCCTGTCCTG
  AAGGACACAG CATTTGTAGG AATTTTATGA ACTGTAACAC ACGTCTACCT TTTCAAGGCT
  GTACTCTGTA CCCATCACCC AGGAAGGGCG GTGGCTCTAC CAGAATTTCC ACAGCAGAAT
  TCATAGGAAG CATTATCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss49505177	NES12855081	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs33599304					SNP	C	C	C	C	T	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49505177	NES12855081	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138101978 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	within coordinates
Rr396335	regulatory region 396335	987 bp upstream
Rr396336	regulatory region 396336	1948 bp upstream
Rr419676	regulatory region 419676	1106 bp distal
Rr419677	regulatory region 419677	within coordinates
Rr419678	regulatory region 419678	1017 bp proximal
Tssr233	transcription start site region 233	1378 bp downstream
Tssr9150	transcription start site region 9150	1940 bp downstream
Tssr9151	transcription start site region 9151	1925 bp downstream
Tssr9152	transcription start site region 9152	1509 bp downstream
Tssr9153	transcription start site region 9153	207 bp upstream
Tssr9154	transcription start site region 9154	1388 bp upstream
Tssr9155	transcription start site region 9155	1451 bp upstream
Tssr14018	transcription start site region 14018	42 bp downstream
Tssr14019	transcription start site region 14019	71 bp downstream
Tssr14020	transcription start site region 14020	103 bp downstream
Tssr14021	transcription start site region 14021	941 bp downstream
Tssr14022	transcription start site region 14022	998 bp downstream
Tssr14023	transcription start site region 14023	1043 bp downstream
Tssr14024	transcription start site region 14024	1386 bp downstream
Tssr14025	transcription start site region 14025	1413 bp downstream
Tssr14026	transcription start site region 14026	1431 bp downstream
Tssr14027	transcription start site region 14027	1452 bp downstream
Tssr14028	transcription start site region 14028	1478 bp downstream
Tssr14029	transcription start site region 14029	1502 bp downstream
Tssr14030	transcription start site region 14030	1656 bp downstream
Tssr14031	transcription start site region 14031	1673 bp downstream