rs33599310 SNP Detail

Summary

• ID
  rs33599310
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:138101777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTAAAA TCATCTTATG
  CCAGATAAAC CTCATCCAAG CAAATTCGCA ACTTACCTAA CTGGATTTTC TTTTGAAAAA
  AAAATCCATC TTTCCAATTA AAAAGCAAAA CAAACTTATT GTGATAACAT CAACAAACAA
  GTATCTGAGG CTGCATTTCT TTTCCAGGCC CTCAGACAAC ACAGAGCAGA CGTTAGCCGG
  Y
  TTAGTACCAG GGATTTCTTT GGAAACGAGA GGAGTGAACA TCAGGAAAAA AATAAAATTG
  AATTCTGATA CAATTAACTA TTTTCCCCAT TTAAAAGTAT CTTAGATTAA ACACTACAAG
  GAGAAATGCC ATCTAGCTGT AACTTGATAA TCAACTCATG TCTCAAAGAG AAACTACTCC
  AGAAATAATT ATTGACCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49505183	NES12855078	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33599310					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49505183	NES12855078	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138101777 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	Intron
Rr396335	regulatory region 396335	1188 bp upstream
Rr419676	regulatory region 419676	905 bp distal
Rr419677	regulatory region 419677	within coordinates
Rr419678	regulatory region 419678	1218 bp proximal
Tssr233	transcription start site region 233	1579 bp downstream
Tssr9150	transcription start site region 9150	1739 bp downstream
Tssr9151	transcription start site region 9151	1724 bp downstream
Tssr9152	transcription start site region 9152	1308 bp downstream
Tssr9153	transcription start site region 9153	408 bp upstream
Tssr9154	transcription start site region 9154	1589 bp upstream
Tssr9155	transcription start site region 9155	1652 bp upstream
Tssr14017	transcription start site region 14017	1873 bp upstream
Tssr14018	transcription start site region 14018	243 bp downstream
Tssr14019	transcription start site region 14019	272 bp downstream
Tssr14020	transcription start site region 14020	304 bp downstream
Tssr14021	transcription start site region 14021	1142 bp downstream
Tssr14022	transcription start site region 14022	1199 bp downstream
Tssr14023	transcription start site region 14023	1244 bp downstream
Tssr14024	transcription start site region 14024	1587 bp downstream
Tssr14025	transcription start site region 14025	1614 bp downstream
Tssr14026	transcription start site region 14026	1632 bp downstream
Tssr14027	transcription start site region 14027	1653 bp downstream
Tssr14028	transcription start site region 14028	1679 bp downstream
Tssr14029	transcription start site region 14029	1703 bp downstream
Tssr14030	transcription start site region 14030	1857 bp downstream
Tssr14031	transcription start site region 14031	1874 bp downstream