rs33599312 SNP Detail

Summary

• ID
  rs33599312
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138101637 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAAG CAAATTCGCA ACTTACCTAA
  M
  TGGATTTTCT TTTGAAAAAA AAATC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss49505185	NES12855077	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	A	C	C	C	A	C		A	A	C	A		C
ss320000109	CHEV_1_140070476	CHEVERUD	SCREENING_POP	f	SNP											A					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs33599312					SNP	C	C	C	C	A	C	C	C	A	C	A	A	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49505185	NES12855077	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138101637 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	within coordinates
Rr396335	regulatory region 396335	1328 bp upstream
Rr419676	regulatory region 419676	765 bp distal
Rr419677	regulatory region 419677	within coordinates
Rr419678	regulatory region 419678	1358 bp proximal
Tssr233	transcription start site region 233	1719 bp downstream
Tssr9150	transcription start site region 9150	1599 bp downstream
Tssr9151	transcription start site region 9151	1584 bp downstream
Tssr9152	transcription start site region 9152	1168 bp downstream
Tssr9153	transcription start site region 9153	548 bp upstream
Tssr9154	transcription start site region 9154	1729 bp upstream
Tssr9155	transcription start site region 9155	1792 bp upstream
Tssr14017	transcription start site region 14017	1733 bp upstream
Tssr14018	transcription start site region 14018	383 bp downstream
Tssr14019	transcription start site region 14019	412 bp downstream
Tssr14020	transcription start site region 14020	444 bp downstream
Tssr14021	transcription start site region 14021	1282 bp downstream
Tssr14022	transcription start site region 14022	1339 bp downstream
Tssr14023	transcription start site region 14023	1384 bp downstream
Tssr14024	transcription start site region 14024	1727 bp downstream
Tssr14025	transcription start site region 14025	1754 bp downstream
Tssr14026	transcription start site region 14026	1772 bp downstream
Tssr14027	transcription start site region 14027	1793 bp downstream
Tssr14028	transcription start site region 14028	1819 bp downstream
Tssr14029	transcription start site region 14029	1843 bp downstream
Tssr14030	transcription start site region 14030	1997 bp downstream