rs33599431 SNP Detail

Summary

• ID
  rs33599431
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121976408 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCGTC AGTCTCACCA GCACTCTTGC
  Y
  AGTTAAACAA TAAATAGTTT TCCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45298121	mCV24434375	ABI	CRAMUS_MOUSE	f	SNP	T	C	C	C
ss147409973	ENSMUSSNP7024952	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33599431					SNP	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121976408 () rs orientation: forward

Symbol	Name	Function Class
B2m	beta-2 microglobulin	1760 bp upstream
Cpgi12169	CpG island 12169	1665 bp proximal
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr397252	regulatory region 397252	1501 bp upstream
Rr563912	regulatory region 563912	1269 bp proximal
Rr563913	regulatory region 563913	1770 bp proximal
Tssr19804	transcription start site region 19804	1548 bp upstream
Tssr19805	transcription start site region 19805	1753 bp upstream
Tssr19806	transcription start site region 19806	1795 bp upstream
Tssr25953	transcription start site region 25953	1027 bp downstream
Tssr25954	transcription start site region 25954	1575 bp downstream