rs33599459 SNP Detail

Summary

• ID
  rs33599459
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164116987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGCACAAG CCTTGTTCAC ACAGAACCAA GGGCAGGTCA
  GTTGCCATTT TCTTCCACTC AAAATCACTC TTCTCTTTCC ACCAGGGTCA AATTCATTCT
  K
  GATTAGGAAC CTTTGTCAGT GCAGTTTGTC TGCAGAATCA CAGAAGTGTC CTGACCTTGT
  TCTGTTCTGA CTACTATCTC AATGTGAGCT TTGAGGTTG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45297951	mCV23736631	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	T
ss148221254	ENSMUSSNP4256278	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs33599459					SNP	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164116987 () rs orientation: forward

Symbol	Name	Function Class
Svs4	seminal vesicle secretory protein 4	889 bp downstream
Tssr21549	transcription start site region 21549	885 bp upstream
Tssr21550	transcription start site region 21550	991 bp upstream
Tssr27409	transcription start site region 27409	911 bp downstream
Tssr27410	transcription start site region 27410	934 bp downstream
Tssr27411	transcription start site region 27411	971 bp downstream
Tssr27412	transcription start site region 27412	1009 bp downstream
Tssr27413	transcription start site region 27413	1016 bp downstream
Tssr27414	transcription start site region 27414	1034 bp downstream
Tssr27415	transcription start site region 27415	1050 bp downstream