rs33600054 SNP Detail

Summary

• ID
  rs33600054
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138101572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTAATGTT CTTTCTCACC
  CATTTAAAGA AAATCGGAAA ATTGCCCCGA GTGGGGACTT ACAGTGGAAA TATGCCAATA
  TATGATAAAA TGTACAATCT TCAATTCTTC TCTATAATTC TCTTTACATT ATAACAAAAA
  TCATAGAGAG CTCACGACCT GGGAAGTAGT TGGTGCATTG TGACAAGATT CTGTGGTGCC
  S
  TGCATTGTTT AAAATCATCT TATGCCAGAT AAACCTCATC CAAGCAAATT CGCAACTTAC
  CTAACTGGAT TTTCTTTTGA AAAAAAAATC CATCTTTCCA ATTAAAAAGC AAAACAAACT
  TATTGTGATA ACATCAACAA ACAAGTATCT GAGGCTGCAT TTCTTTTCCA GGCCCTCAGA
  CAACACAGAG CAGACGTTAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49505187	NES12855076	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	G	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33600054					SNP	C	C	C	C	G	C	G	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49505187	NES12855076	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138101572 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	within coordinates
Rr396335	regulatory region 396335	1393 bp upstream
Rr419676	regulatory region 419676	700 bp distal
Rr419677	regulatory region 419677	within coordinates
Rr419678	regulatory region 419678	1423 bp proximal
Tssr233	transcription start site region 233	1784 bp downstream
Tssr9150	transcription start site region 9150	1534 bp downstream
Tssr9151	transcription start site region 9151	1519 bp downstream
Tssr9152	transcription start site region 9152	1103 bp downstream
Tssr9153	transcription start site region 9153	613 bp upstream
Tssr9154	transcription start site region 9154	1794 bp upstream
Tssr9155	transcription start site region 9155	1857 bp upstream
Tssr14017	transcription start site region 14017	1668 bp upstream
Tssr14018	transcription start site region 14018	448 bp downstream
Tssr14019	transcription start site region 14019	477 bp downstream
Tssr14020	transcription start site region 14020	509 bp downstream
Tssr14021	transcription start site region 14021	1347 bp downstream
Tssr14022	transcription start site region 14022	1404 bp downstream
Tssr14023	transcription start site region 14023	1449 bp downstream
Tssr14024	transcription start site region 14024	1792 bp downstream
Tssr14025	transcription start site region 14025	1819 bp downstream
Tssr14026	transcription start site region 14026	1837 bp downstream
Tssr14027	transcription start site region 14027	1858 bp downstream
Tssr14028	transcription start site region 14028	1884 bp downstream
Tssr14029	transcription start site region 14029	1908 bp downstream