rs33600059 SNP Detail

Summary

• ID
  rs33600059
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138101484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTGAATT CAAAGATGTT
  TCTTGTGCAA AAAATATCAA TATCCTAATT TATAATTTGG GGGTGACTTG CTCTACAATC
  TGAAGGTACC TTAATGTTCT TTCTCACCCA TTTAAAGAAA ATCGGAAAAT TGCCCCGAGT
  GGGGACTTAC AGTGGAAATA TGCCAATATA TGATAAAATG TACAATCTTC AATTCTTCTC
  Y
  ATAATTCTCT TTACATTATA ACAAAAATCA TAGAGAGCTC ACGACCTGGG AAGTAGTTGG
  TGCATTGTGA CAAGATTCTG TGGTGCCCTG CATTGTTTAA AATCATCTTA TGCCAGATAA
  ACCTCATCCA AGCAAATTCG CAACTTACCT AACTGGATTT TCTTTTGAAA AAAAAATCCA
  TCTTTCCAAT TAAAAAGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49505193	NES12855073	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33600059					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49505193	NES12855073	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138101484 () rs orientation: forward

Symbol	Name	Function Class
Ptprc	protein tyrosine phosphatase receptor type C	within coordinates
Rr396335	regulatory region 396335	1481 bp upstream
Rr419676	regulatory region 419676	612 bp distal
Rr419677	regulatory region 419677	40 bp proximal
Rr419678	regulatory region 419678	1511 bp proximal
Tssr233	transcription start site region 233	1872 bp downstream
Tssr9150	transcription start site region 9150	1446 bp downstream
Tssr9151	transcription start site region 9151	1431 bp downstream
Tssr9152	transcription start site region 9152	1015 bp downstream
Tssr9153	transcription start site region 9153	701 bp upstream
Tssr9154	transcription start site region 9154	1882 bp upstream
Tssr9155	transcription start site region 9155	1945 bp upstream
Tssr14017	transcription start site region 14017	1580 bp upstream
Tssr14018	transcription start site region 14018	536 bp downstream
Tssr14019	transcription start site region 14019	565 bp downstream
Tssr14020	transcription start site region 14020	597 bp downstream
Tssr14021	transcription start site region 14021	1435 bp downstream
Tssr14022	transcription start site region 14022	1492 bp downstream
Tssr14023	transcription start site region 14023	1537 bp downstream
Tssr14024	transcription start site region 14024	1880 bp downstream
Tssr14025	transcription start site region 14025	1907 bp downstream
Tssr14026	transcription start site region 14026	1925 bp downstream
Tssr14027	transcription start site region 14027	1946 bp downstream
Tssr14028	transcription start site region 14028	1972 bp downstream
Tssr14029	transcription start site region 14029	1996 bp downstream