rs33600584 SNP Detail

Summary

• ID
  rs33600584
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:30303434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTTGAGGAG GCCCAGGGGT
  TTTACCTGTG GGATGCAGAA CAGCCTACTC ATTCTCTCAG ACTGAAGCAC AGCTCTTTCT
  AAACTACACT CCTAGGCCTT ATATGCCATC CCCTGGAGGC AAAGACAGCT TCATGGGTGG
  GGCCTGCCCT AGATGCCCAG CCCTCAAGGT ACAGGAGTAC CGTCTCTCAG GGGCCTATAT
  R
  TGCAGGAAGG CTAGGAAAGG GTGGGGGTGT AGATGAGTCA CATTATTGGG GTGGCAGAGG
  TAAGGGGACC TCCCACCTGT CAGGACGCAC GAGAGAGATG GCAGCTGACT CTTTAAGCGA
  AGCCCCCCCA TGTCTCACCC CCCCCCCCCC CGCTTCCAGC TTAAGAAATC GGAGAGAACT
  GGAAATGGGT AAGCTGGTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss45298786	mCV23383225	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss146398620	ENSMUSSNP3303410	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs33600584					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:30303434 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11436	CpG island 11436			1669 bp proximal
Crat	carnitine acetyltransferase			Intron
				Noncoding-Transcript-Variant
Gm16323	predicted gene 16323			294 bp upstream
Rr554310	regulatory region 554310			204 bp proximal
Rr554311	regulatory region 554311			305 bp proximal
Rr554312	regulatory region 554312			1262 bp proximal
Tssr23368	transcription start site region 23368			123 bp upstream
Tssr23369	transcription start site region 23369			682 bp downstream
Tssr23370	transcription start site region 23370			747 bp downstream
Tssr23371	transcription start site region 23371			1880 bp downstream
Tssr23372	transcription start site region 23372			1967 bp downstream
Tssr23373	transcription start site region 23373			1996 bp downstream