rs33600778 SNP Detail

Summary

• ID
  rs33600778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:15077837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCGGG GTCGGGTCGG TGCACGGAGA
  R
  CCCGACCTGG TCATCGAGGT GGCCG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46296016	mCV25113008	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss322517333	CHEV_8_15027837	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33600778					SNP	G	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:15077837 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20129	CpG island 20129	within coordinates
Gm37844	predicted gene, 37844	within coordinates
Kbtbd11	kelch repeat and BTB (POZ) domain containing 11	within coordinates
Rr660168	regulatory region 660168	1506 bp distal
Rr660169	regulatory region 660169	412 bp distal
Rr660170	regulatory region 660170	338 bp proximal
Tssr76486	transcription start site region 76486	661 bp downstream
Tssr76487	transcription start site region 76487	631 bp downstream
Tssr76488	transcription start site region 76488	488 bp downstream
Tssr76489	transcription start site region 76489	450 bp downstream
Tssr76490	transcription start site region 76490	60 bp downstream
Tssr76491	transcription start site region 76491	121 bp upstream
Tssr76492	transcription start site region 76492	917 bp upstream
Tssr80488	transcription start site region 80488	174 bp upstream