rs33601175 SNP Detail

Summary

• ID
  rs33601175
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:116729719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTCCGCGTG AAACCCCCAA GGGGTGGGGT GGGGAGAGAT
  CGGAGTTCAG GGCGGGGGAT GGGATAGAAC GGGACGTCTC GGGTTAGGCA GGCAGCGGAG
  R
  AAGAAGGTGG TTCCCCGGCT GGGTTCACCT CTTGGCTTGG CTCTGAGCTG CGCTGGGAGC
  AGGCTGAGCT CCGTGTCTTC GGCGAAGCAA AGCTAGCCG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45798556	mCV24902563	ABI	CRAMUS_MOUSE	f	SNP		A	A					A		G
ss51804017	NES14719120	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	G	A	G	A	A	G	A	A
ss149139045	ENSMUSSNP5067401	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A							G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33601175					SNP	A	A	A	A	A	A	A	A	A	G	A	G	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51804017	NES14719120	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:116729719 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi16401	CpG island 16401			within coordinates
Rr618511	regulatory region 618511			1271 bp distal
Rr618512	regulatory region 618512			147 bp proximal
Rr618513	regulatory region 618513			1614 bp proximal
Rr618514	regulatory region 618514			1648 bp proximal
Srrm4	serine/arginine repetitive matrix 4			Intron
				mRNA-UTR
Tssr52867	transcription start site region 52867			177 bp upstream
Tssr52868	transcription start site region 52868			122 bp downstream
Tssr52869	transcription start site region 52869			151 bp downstream
Tssr52870	transcription start site region 52870			198 bp downstream