rs33601623 SNP Detail

Summary

• ID
  rs33601623
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31426638 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACACTGCCA ACTGTCCTTT
  ACAAAGGTGG CTGTAGAACT TAAATGCTGT GGGATTTACA TTATTGTTTC ATTGGTTCTG
  GAGGAGAGAG GGAGTCGAGT CACTTTACGG AAATCCCTCA TGCTACATAC GTAGTGCTTA
  ATGTTTAAAG TTCTCACTTC AAAACAACAA CAACAGCAGG TCAATTAAAT CTTTTTTTTA
  W
  AAAAGTTTTT ATAAGCAAGC AGGGAGAGTA CATACAGTGA ATACCAGTGT TCAGTCTGTA
  GACACGGAGG CTAAGGTCCA GGATGGCGAG GGTGGGTGCT CGGCAGAACC CATGAGAGAA
  GCCTGTTCCA GACTCCTGCT CCCTCCTTCT GCTCCTCCCT CCCCCACACT CCCAGGTCCT
  CCTCCCAAGT GCTTCCCAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39555860	mCV24711106	ABI	CRAMUS_MOUSE	f	SNP	T	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs33601623					SNP	T	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31426638 () rs orientation: forward

Symbol	Name	Function Class
Rr339574	regulatory region 339574	within coordinates
Rr370214	regulatory region 370214	157 bp upstream
Tssr143654	transcription start site region 143654	385 bp upstream
Tssr147277	transcription start site region 147277	1133 bp downstream
Tssr147278	transcription start site region 147278	1149 bp downstream
Ubash3a	ubiquitin associated and SH3 domain containing, A	209 bp upstream